4Pi-BRAINSPOT reconstruction workflow preview

01 / 4PI NANOSCOPY

4Pi-BRAINSPOT

A toolbox for interferometric ultra-high resolution 3D imaging through brain sections. It integrates 4Pi single-molecule nanoscopy with in situ PSF retrieval and supports the full reconstruction workflow, from channel alignment and localization to drift correction, volume alignment, image reconstruction, and morphological analysis.

  • 3D imaging
  • PSF retrieval
  • Reconstruction
SRST three-dimensional localization preview

02 / DEEP LOCALIZATION

SRST

Super-resolution spatiotemporal information integration is a deep learning-driven approach for precise three-dimensional localization of ultra-high-density molecules.

  • Deep learning
  • 3D localization
  • High density
INSPR point spread function retrieval interface

03 / IN SITU PSF

INSPR

INSPR constructs an in situ 3D PSF directly from single-molecule data for biplane and astigmatism-based setups. Its interface covers model generation, CPU or GPU localization, drift correction, volume alignment, and super-resolution reconstruction.

  • PSF retrieval
  • SMLM
  • CPU and GPU
Live-SIMBA ImageJ plugin preview

04 / LIVE-CELL ANALYSIS

Live-SIMBA

An accelerated ImageJ plug-in for time-series analysis in living cells. Live-SIMBA removes the dual-channel requirement through intensity-based sampling and improves computing speed with multi-core parallel processing.

  • ImageJ
  • Live cell
  • Time series
DLBI super-resolution structure reconstruction preview

05 / BAYESIAN RECONSTRUCTION

DLBI

Deep learning guided Bayesian inference combines learned local and temporal features with statistical refinement for structure reconstruction from high-density, time-series fluorescence microscopy data.

  • Bayesian inference
  • Deep learning
  • Time series